species:   Rhsol
pid:       PID0559
parent:    Rhi-milR-152
paralog:   
locus:     KB317727.1:132052-132150
matures:   ['UGUGGCUUGGAGCUGGCAAGGA', 'CUUGUUCUGCAGCUCUAAGCUCUACA']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317727.1:132052-132150

5 out of bounds
83 alignments
47 proper strand
45 stranded perfect matches

    *********************************                            *************************         
UAGACCAUCAUCUUGUUCUGCAGCUCUAAGCUCUACAGUAUUGACUAUUUUAGUGACAAAUGUACAGUGUGGCUUGGAGCUGGCAAGGAGUCACAGCAC
..(((.....((((((....((((((((((((.(((.(((((.((((...)))).).....)))).))).)))))))))))))))))).))).......
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGA---------- l=22 a=2 c
-----------CUUGUUCUGCAGCUCUAAGCUCUACA-------------------------------------------------------------- l=26 a=0 c*
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAG--------- l=23 a=34 ma
------AUCAUCUUGUUCUGCAGCUCUAAGCUCUACA-------------------------------------------------------------- l=31 a=0 ma*

UAGACCAUCAUCUUGUUCUGCAG---------------------------------------------------------------------------- l=23 a=1 
---------------------------------------------------------AAAUGUACAGUGUGGCUUGGAGC------------------- l=23 a=3 
---------------------------------------------------------AAAUGUACAGUGUGGCUUGGAGCUGGC--------------- l=27 a=1 
------------------------------------------------------------UGUACAGUGUGGCUUGGAGCUGG---------------- l=23 a=1 
------------------------------------------------------------UGUACAGUGUGGCUUGGAGCUGGCA-------------- l=25 a=1 
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGA---------- l=22 a=2 (c)
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAG--------- l=23 a=34 (ma)
-------------------------------------------------------------------UGUGaCUUGGAGCUGGCAAGGAG--------- l=23 a=1 
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAGU-------- l=24 a=1 
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAGa-------- l=24 a=1 
-------------------------------------------------------------------------UUGGAGCUGGCAAGGAGUCACAG--- l=23 a=1 

mb-00111
ax-1001011
ku-01
ss-111110101000
fn-101
